Gastroenterology EMR Software

The Best Gastroenterology EMR and Buyer's Guide 2025

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by Emiley Parker
Last Updated: Nov 01, 2025

What is Gastroenterology EHR Software?

Gastroenterology is a medical specialization focused on the digestive system and its accompanying functions, which include the organs from the mouth to the anus. Due to the multiple organs and functions on review, a gastroenterologist needs tools specific to their specialization to make every day functioning smooth, as well as efficient.

There is countless Electronic Medical Records (EMR) software in the market but only a few that offer specialization-specific software. Each vendor seems to offer a lot but doctors are never sure whether it’s a marketing gimmick or are they actually that good. We have a few tips to keep in mind when choosing a vendor for gastroenterology.

Features of Gastroenterology EHR Software

Everything else being the same, there are some features that are unique to Electronic Health Records (EHR) software targeted especially for gastroenterology specialties.

To have a good understanding of how the software works, it is advisable to learn about the different features and functionalities of the software. Before choosing a Gastroenterology EHR software, you should check if the software has the following key features:

Specific Templates – Customized templates are always an advantage because it makes charting, as well as patient visits, run smoother and more organized. Software made especially for gastroenterology will have the following in-built templates:

  • Hepatitis
  • Crohn’s disease
  • Incontinence
  • Abdominal pain
  • Constipation
  • Diverticulitis
  • Hemorrhoids
  • UTI
  • Gallbladder problems

Workflow Management – If you work in a Gastroenterology practice, you need to deal with recording and storing large volumes of data. The EHR software should be able to manage, document, and maintain all the Gastroenterology related workflows. This helps the physicians in having a better understanding of the condition of the patient and helps them in taking the right decisions at the right times.

Real-time Dashboard – The Top Gastroenterology EMR software must feature a real-time dashboard that will help physicians clearly view patient charts, profiles, billing processes, scheduling, etc. all in one place. The dashboard also saves the time that is taken in opening multiple tabs.

ICD/CPT Codes – As the CDC updates its codes and lists for new diseases and their classifications, it only makes sense that the Electronic Medical Records system is familiar with and constantly updates with codes specific to gastroenterology. This also makes billing easier and quicker, because selecting the code from a list and transferring it immediately to the billing office takes only a few seconds.

Imaging Integration – Gastroenterology relies heavily on imaging tests such as endoscopy and colonoscopy images. Any EMR specific to gastroenterology must be integrated with these machines so test results can immediately be downloaded on handheld devices and automatically stored in patient files.

Disease Registers – The electronic medical records software should have inbuilt to alert doctors in case there are certain symptoms that warn of worsening conditions, or drugs and allergies that shouldn’t be missed.

How to Choose Gastroenterology EHR Vendor?

Now that you’ve narrowed down all the vendors that provide gastroenterology-specific electronic health records (EHR) software you need to narrow the selection down to those that fill your requirements as a specialty as well as a medical practice.

Size – Some vendors cater better to large practices while some are best suited to smaller ones. EMR systems are designed keeping a certain number of users, scalability, and support required in mind. When selecting a vendor keep in mind the size of your practice.

System Design – The choice, essentially, is between the installation of the software in your on-site computer server, or cloud-based software that is available anywhere via the Internet. Which system a practice goes for depends on their personal choice and comfort level. Some doctors feel more comfortable having the system on their computer server because they feel this is more compliant with HIPAA requirements, while others need to have access to their database wherever they are. You’ll need to shortlist vendors who fulfill your needs in this department.

Certification – It makes sense to make sure the software you’re going to purchase is certified. For gastroenterology, the certification you should be looking out for is by the ONC-Authorized Testing and Certification Body (“ONC-ATCB”). They are responsible for ensuring your vendor meets Meaningful Use objectives and is HIPAA compliant.

What You Need To Know About EMR Software

Overview

Electronic Medical Records Software or commonly referred to as EMR Software represents the electronic method of storing medical records for patients. Using specially designed software, physicians and other medical professionals can store anything ranging from patient demographics to extensive clinical information about patients, such as medical history, social history, lab reports, and more.

EMR Software by Specialty

Since all medical providers (MDs, DOs, PAs, NPs, LCSW, OT, etc.) work in a distinct manner based on their background and medical specialty, EMR Software or EHR Software must accommodate the unique style and documentation requirements. Examples of such specialty-specific features include the ability to annotate on images or the capability to store before/after photos for Pain Management specialists and Dermatology specialists respectively. Similarly, other specialties such as Pediatrics, Oncology, Podiatry, Ophthalmology, Neurology, Nephrology, Dialysis Centers, Rheumatology, and Chiropractic Care require their unique set of specialty-specific features to simplify adoption.

Meaningful-Use

Since the introduction of the HITECH Act, healthcare IT has undergone a massive transition starting from the widely recognized Meaningful Use program to what is now known as MACRA, the Medicare EHR Incentive Program. The Meaningful Use program has transformed and now formed part of the four components of the new Merit-Based Incentive Payment System (MIPS), which itself is a fundamental part of MACRA.

For some medical practices, the transition from paper-based records to EMR Software (Electronic Medical Records Software) has not been a simple one. Regardless, realizing that the benefits of utilizing ONC Certified EMR Software far outweigh the hassle and challenges associated with it – ensuring a viable future, most practices today have successfully transformed their clinical and administrative operations to EMR Software.

EMR Software Benefits

Aside from ensuring tangible financial incentives and profitability, practices converting to EMR / EHR Software have seen the following benefits:

EMR Software Requirements by Practice Size

Just like a medical specialty, EHR Software requirements also depend on the size of the medical practice. From solo-provider clinics to large multi-provider, multi-specialty clinics, every practice has unique inherent challenges that must be addressed by the EMR Software vendor.

Small or Solo Provider Practices

A small doctor’s office not only has a limited number of staff members but their EMR Software budgets are also extremely low compared to a large enterprise such as a hospital. Due to these budgetary constraints, many providers simply choose to employ Free EMR Software or choose an affordable EHR Software vendor with a low fixed monthly fee. Cloud-based access is one such important requirement so that these providers can access patient charts even from home when needed.

Medium-Sized Practices

These practices usually consist of 5 to 10 medical providers often belonging to the same medical specialty. Their requirements are more stringent, and their budget is also considerably large. Aside from specialty-focused requirements (EHR Software by Specialty), these practices also require unique features such as interoperability, dedicated customer support, multi-device support as well as extensive reporting functionality to keep an eye on the overall performance of the practice.

Large practices

Larger group practices generally comprise more than fifteen or often twenty medical providers. These practices usually provide medical services that fall under various medical specialties (Orthopedics, Pain Management, Surgery, Chiropractic Medicine, Family Medicine, etc.). Therefore, these practices require support for multiple users to access the system simultaneously, as well as for the Scheduling software to accommodate multiple locations, providers, and resources such as Dialysis Chairs, procedure room allocation, etc. These practices also keep replacing or adding staff members and need a scalable solution.

Hospitals or enterprise organizations

EHR software companies such as Epic, Cerner, AllScripts, NextGen, Athenahealth, IMS by Meditab, eClinicalWorks, Meditech, McKesson, MEDHOST, etc. usually target and provide solutions for larger corporations like Hospitals, ACOs, PCMH, IPAs, CINs (Clinically Integrated Networks), Public Health Departments, etc.

These customers have the most elaborate list of requirements, which are usually documented in the form of an RFI or RFP to assess and shortlist vendors that can meet them. The requirements consist of features like inventory management modules, interface with local labs (LIS), machines, and diagnostic equipment along with drug dispensing (pharmacy management software) and electronic medication administration records (EMAR), etc.

These entities also require the EHR software also need to integrate with multiple other software and medical devices.

Why does your practice need EMR Software?

Since the introduction of Meaningful Use, most healthcare practices simply have little or no choice but to convert their practice operations to EHR software. However, most providers today select the EHR software of their choice that best suits their specific needs and must perform an extensive search to evaluate all available options before they find one that is suitable. Most potential EMR Software buyers in the market today have the following in common:

  1. Do not know what they are looking for
  2. Know exactly what they want but don’t know where to start or find it
  3. Relying on advice from colleagues using EMR software already

Although #3 is ideal, every provider and their practice workflow are unique and therefore what works for one provider may not suit the other. “One size fits all” simply doesn’t apply in the world of healthcare IT. Software experts and industry specialists are an ideal source of information, advice and ultimately ensuring that the right decision is made.

 

Market Trends to Be Aware Of

Like anything else, the EMR software industry is also subject to constant changes. From new technology to legalities and governing bodies, everything is constantly changing. Here are some of the changes I think it would do well for you to keep track of.

Cloud-Based Services

Recent research found that only 25% of practitioners are interested in a web-based model and only 50% are willing to have it as an initial model that eventually transitions to cloud-based. Cloud-based EMR software cuts down on steep upfront costs for client servers and can be hosted on any device that has a web browser. It’s no surprise that more and more vendors are transitioning to cloud-based software because the industry demands are changing. The move to the public cloud for healthcare is vital in the current changing landscape. For practices that don’t adopt new cloud services, the old inferior feature set coupled with the higher prices will hinder the business dramatically. This gulf between the old software and the new cloud-based software will only grow more exponentially as time goes on.

Meaningful Use Changes

At a recent healthcare conference Andy Slavitt, the administrator of the Centers for Medicare & Medicaid Services declared that Meaningful Use was over, and would be replaced by the end of this year with something better. But a deeper look into the claims revealed that meaningful use would very much still be there, only much improved.

The new measures aim to make the reporting and benchmark for reaching the required reports much easier and laxer than under Meaningful Use, along with other changes.

As the CMS has officially renamed Meaningful Use to “Promoting Interoperability” as of 2018, it’s important to understand its updated principles. Effective interoperability of healthcare data will ensure that electronic health information is shared properly between healthcare and public health partners in the right format and at the right time. Starting in 2022, the CMS requires all eligible healthcare services to implement upgraded versions of EHR software that utilize this updated definition.

EMR/EHR Software Demand

In 2025, the demand for EMR software solutions for healthcare practices has continued to rise, with market growth estimated at around 6-7% year-over-year as healthcare providers increasingly prioritize digital transformation and interoperability. This increase is largely driven by the adoption of advanced technologies like AI and cloud computing within these systems, which enhance clinical workflows and patient care. Epic Systems has expanded its dominance, now capturing over 35% of the market, particularly among large multispecialty organizations. Meanwhile, Oracle Health (formerly Cerner) has faced challenges, especially in retaining smaller hospitals, contributing to a slight decline in its market share. Together, major players like Epic, Oracle Health, Meditech and Allscripts account for a significant portion of the EHR market, reflecting the ongoing evolution and consolidation within the industry.

Widespread Interoperability

Electronic Medical Records don’t offer patients the ability to access their own records across multiple healthcare organizations due to the lack of data-sharing standards set between different practices. This causes significant problems for patients who receive care from multiple different centers. The issue also makes the diagnosis of patients harder for physicians and healthcare providers. Due to this, EMR/EHR providers are updating their software to include interoperability and integration features to allow data to be shared between these different organizations.

Latest in Gastroenterology EMR Software

Mobile Capabilities & DICOM Compatibility by gGastro EHR Software

Award-winning gastroenterology EHR company Modernizing Medicine® advances her industry-leading as it plans to provide image sharing for Gastroenterology EHR Software through Digital Imaging and Communications in Medicine (DICOM). gGastro EHR & Endoscopy Report Writer Software along with practice management software, patient portal, revenue cycle management, and data analytics services is also developing both iOS and Android apps.