Best Pathology EMR Software Buyer's Guide 2025

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Emiley Parker

Nov 07, 2025
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What Is Pathology EMR Software?

Pathology EMR software solution provides pathologists with a powerful range of capabilities to help them identify illnesses from autopsies and biopsy samples. It streamlines clinical and administrative processes, allowing pathologists to diagnose patients more quickly. However, given the complexity of pathology, an EMR software system may not provide all the capabilities needed to enhance patient care.

What Are The Features Of Pathology EMR Software?

Pathology-specific EMR software should have the following key features to provide optimal benefit to pathologists:

Lab Connectivity — This feature is crucial for pathologists, as diagnosis relies heavily on laboratory examinations and results. Lab integrations allow pathologists to connect with major labs to ensure orders are sent and received quickly, improving the diagnosis process.

EHR Software Alerts — The Pathology EMR software alerts feature improves patient safety. Alerts like dosage, drug-to-drug interaction, and drug allergies help enhance the quality of care, as healthcare providers are constantly informed of any potential threats without delay.

Coding and Billing — Pathology EMR Software's integrated medical billing solution should be ready for ICD-10 to ensure precise and correct coding and billing.

Integrated Practice Management Software – Integrated Practice Management (PM) software offered by pathology EMR Software enable healthcare providers to track performance through extensive reporting facilities and provide complete practice solutions.

How To Choose A Pathology EMR Vendor?

There are a few factors to consider before selecting a pathology EMR software vendor. These will help your decision-making process:

Practice Size – EMR vendors offer different services suitable for different practice sizes. A mid-sized practice needs vendors that offer EMR solutions specifically for their practice size. Look for Pathology EMR software vendors that support clinic size and operations.

System Design — EMR software vendors offer their customers either on-premises or cloud-based solutions. The choice depends on the customer's preference for the deployment offered. Most practices prefer a cloud-based system, as the software can be used anywhere. This enables practice on the go without worrying about accessibility issues.

Certification – Any EMR Software solution should offer security and protection of sensitive patient data. HIPAA Compliance is paramount for pathologists to ensure the security of patient records around the clock.

What is Electronic Health Records (EHR) Software?

Finding Electronic Medical Records (EMR) Software is a time-consuming project. With over 600 EMR/EHR and Practice Management Software companies available in the market, there are many things to consider before using or switching your EMR Software. Practitioners must ensure they have covered every aspect involved before making a final decision. EMR Software or EHR Software (Electronic Health Records) merely represents maintaining medical records for patients electronically or using a computer system. Specially designed software enables physicians and other medical professionals to store extensive patient data ranging from patient demographics to detailed clinical information, such as medical history, social history, lab reports, etc.

EMR Software by Specialty

Since all medical providers (MDs, DOs, PAs, NPs, LCSW, OT, etc.) work distinctly based on their background and medical specialty, EMR Software or EHR Software must accommodate the unique style and documentation requirements. Examples of such specialty-specific features include the ability to annotate images and store before/after photos for Pain Management and Dermatology specialists, respectively. Similarly, specialties such as Pediatrics, Oncology, Podiatry, Ophthalmology, Neurology, Nephrology, Dialysis Centers, Rheumatology, and Chiropractic Care require their unique specialty-specific features to simplify adoption.

Meaningful-Use

Since the introduction of the HITECH Act, healthcare IT has undergone a massive transition. It started with the transition of the widely recognized Meaningful Use program to what is now known as MACRA, the Medicare EHR Incentive Program. The Meaningful Use program has transformed and is now part of the four components of the new Merit-Based Incentive Payment System (MIPS), which itself is a fundamental part of MACRA.

For some medical practices, the transition from paper-based records to EMR Software (Electronic Medical Records Software) has not been a simple one. Regardless, realizing that the benefits of utilizing ONC Certified EMR Software far outweigh the hassle and challenges associated with it - ensuring a viable future, most practices today have successfully transformed their clinical and administrative operations to EMR Software.

EHR Software Benefits

Aside from ensuring tangible financial incentives and profitability, practices converting to EMR / EHR Software have seen the following benefits:

  • Improved Practice Efficiency
  • Improved Profitability and Revenue Cycle (Medical Billing Services)
  • Patient Engagement(via Patient Portal)
  • Decreased Stationary Costs
  • Better Care Coordination
  • Enhanced Security and Safety (Cloud Storage & Back-ups) - Cloud-based EMR Software
  • Connectivity between doctors & hospitals across the country - Health Information Exchange (EMRs with HIE connectivity)

EHR Software Based on Practice Size

Not all EMR Software vendors suit hospitals and clinics with multiple specialties or providers. Similarly, EMR system vendors designed for larger organizations, such as hospitals or multi-provider clinics, do not usually support a solo doctor practice or a small medical enterprise. Budgetary constraints aside, many other factors will make an EMR Software vendor viable for your medical practice. From solo-provider clinics to large multi-provider and multi-specialty clinics, every practice has unique inherent challenges that must be addressed by its respective Electronic Medical Records (EMR) Software vendor.

Small or Solo Provider Practices

A small doctor's office not only has a limited number of staff members, but its EMR Software budget is also meager compared to a large enterprise such as a hospital. Due to these budgetary constraints, many providers simply choose to employ Free EMR Software or choose an affordable EHR Software vendor with a low fixed monthly fee. Cloud-based access is one such important requirement so that these providers can access patient charts even from home when needed.

Large Practices

Larger group practices generally comprise more than fifteen or, often, twenty medical providers. These practices usually provide medical services that fall under various medical specialties (Orthopedics, Pain Management, Surgery, Chiropractic Medicine, Family Medicine, etc.). Therefore, these practices require support for multiple users to access the system simultaneously and for the Scheduling software to accommodate multiple locations, providers, and resources such as dialysis chairs, procedure room allocation, etc. These practices also keep replacing or adding staff members, and need a scalable solution.

Medium-Sized Practices

These practices usually consist of 5 to 10 medical providers, often belonging to the same medical specialty. Their requirements are more stringent, and their budget is also considerably larger. Aside from specialty-focused requirements (EMR Software by Specialty), these practices also require unique features such as interoperability, dedicated customer support, multi-device support, and an extensive reporting functionality to keep an eye on the overall performance of the practice.

Hospitals or Enterprise Organizations

EHR software companies such as Epic, Cerner, AllScripts, NextGen, Athenahealth, IMS by Meditab, eClinicalWorks, Meditech, McKesson, MEDHOST, etc., usually target and provide solutions for larger corporations like Hospitals, ACOs, PCMH, IPAs, CINs (Clinically Integrated Networks), Public Health Departments, etc.

These customers have the most elaborate list of requirements, which are usually documented in the form of an RFI or RFP to assess and shortlist vendors that can meet them. The requirements consist of features like inventory management modules, interface with local labs (LIS), machines, and diagnostic equipment, along with drug dispensing (Pharmacy Management Software) and Electronic Medication Administration Record (EMAR), etc. These entities also require the EMR Software to integrate with multiple other software and medical devices.

Why Does Your Practice Need EMR Software?

Since the introduction of Meaningful Use (MU), most healthcare practices have had little or no choice but to convert their practice operations to an EMR system. However, most providers today select the EHR software vendor of their choice that best suits their specific needs and must perform an extensive search to evaluate all available options before they find one that is suitable. Most potential EMR Software buyers in the market today have the following in common:

  1. Do not know what they are looking for
  2. Know exactly what they want, but don't know where to start or how to find it
  3. Relying on advice from colleagues using EMR software already

Although #3 is ideal, every provider and practice workflow is unique, and what works for one provider may not suit another. "One size fits all" simply doesn't apply in healthcare IT. Software experts and industry specialists are an ideal source of information, advice, and ultimately ensure that the right decision is made.

What To Look For In A Potential EHR Software Vendor

EMR systems include several types of software based on specific applications or functionalities:

Cloud-Based EMR Software

Small doctor offices benefit the most from Cloud-based EMR Software technology since minimal to no upfront cost or maintenance is required.  Additionally, there is the added benefit of accessing your EHR (Electronic Health Record) software from any device with internet access. This type of software is also device-independent in most cases and can be accessed using devices such as Smartphones (Android & iOS), iPhones, iPads, laptops, and desktop computers. The move to the public cloud for healthcare is vital in the changing landscape. For practices that don't adopt new cloud services, the old, inferior feature set and higher prices will dramatically hinder the business. This gap between the old software and the new cloud-based software will only grow exponentially over time.

EHR Software Essentials

Electronic Health Records (EHR) Software for practices offering specialties should provide tools and templates to reduce the workload of the practice by featuring seamless documentation of the daily clinical workflow of the specialties and specifying the areas of concern. It should also provide improved methods for capturing text, scanning images and reports, e-prescribing, and management of raw data.

ONC-ATCB Certified EMR Software Vendors

This is the most significant requirement for most EMR software buyers today, as the software must comply with the standards and guidelines set by the Office of the National Coordinator (ONC). The online repository details all software vendors and their compliance with the ONC's measures (Click here). Software that complies with these standards has undergone rigorous testing and met a benchmark level defined by the federal body. The software testing done during this exercise checks all areas of the EMR Software system, from Patient Portal access to the way the EHR Software communicates with other programs and entities like labs, Pharmacies (via e-Rx), hospitals, HIEs, etc.

Integrated Practice Management (PM) Software

With competition rising in healthcare IT, EMR Vendors providing integrated Practice Management (PM) systems as part of their overall software package easily outperform rivals with standalone EHR system, including those that may provide a specialty-specific EHR software. EMR Software companies with integrated Practice Management solutions often tend to provide extensive reporting capabilities to track practice performance and manage business operations better.

Integrated Medical Billing Software

Operations within a medical practice can be streamlined by EMR Software. One such important operation is billing for services rendered and communications with insurance companies. Medical Billing Software, therefore, works best when integrated with Electronic Medical Records (EMR) Software. All clinical documentation seamlessly conforms to the required standard and forms a financial document that can be electronically sent to payers (insurance carriers) to verify and process at their end. This simplifies the operations and ensures all parties are on the same page when it comes to the financial health of the enterprise. Medical Billing Software helps practices and Medical Billing managers generate claims, patient statements, verify patient eligibility, and more. This software is ideal for practices that want to handle billing in-house and integrate it with EMRs.

Security

An EMR Software must ensure the safety and security of patient records while ensuring privacy and HIPAA compliance for patient/doctor communication (Patient Portal). This is a paramount concern for physicians, and the EHR Vendor should guarantee HIPAA compliance at all times. Most Vendors today (Epic, Cerner, Athenahealth, AdvancedMD, PrognoCIS, Modernizing Medicine, eClinicalWorks, etc.) are aware of the importance of HIPAA compliance and have taken steps to ensure the safety of patient records security in every section of the EHR Software using advanced tools like data encryption, to enhance the security of the EMR software.

athenahealth EHR Software and practice management software

Athenahealth EHR Software

Specific Services

One of the decisions your practice will have to make is whether you want just an EMR system or one with integrated Practice Management for Medical Billing and Patient Scheduling. There are advantages to having both together, but there have been cases where some practices only go for one in case they had unique requirements that a vendor could not fulfill, or they had already paid a hefty amount for a PM system and weren't looking to replace it yet.

Ease of Use and Training

Doctors are not IT professionals, and though some might be tech-savvy, it would be egregious to expect them all to be experts on EHR software. Ease of use is essential to make the transition from paper to electronic smooth, as well as the day-to-day practice to go along without a hitch. If the software is too complicated and hard to understand, it's a waste of precious time and needlessly aggravating. Some vendors offer free training, while others don't make sure you ask for training when you purchase, if your staff needs it.

Specialty-Based EMR Software

Every medical provider works uniquely, and some EMR Software Vendors today have decided to tailor their EHR Software for a particular specialty or a limited number of specialties. This has been the inevitable culmination of the EHR Software journey, as more and more specialists were required to start using Electronic Medical Records Systems. Since the majority of the EHR Software suppliers at the time were focused on selling to all medical providers regardless of specialty, specialty providers soon learned that their software did not necessarily meet the requirements of their unique clinical workflow. Therefore, the demand for a specialty-specific EMR System gave birth to a specialty-focused EMR Software market. Vendors started introducing specialty-specific EHR Software, and today there are unique EMR Systems available for the most demanding specialties, such as Oncology, Dermatology, Chiropractic Medicine, Orthopedics, Pain Management, General Surgery, Alternative, and Holistic Medicine.

Customer Support Quality

Your EHR Software may meet all your expectations, but what happens when you encounter an issue? It’s not inevitable for any software application to malfunction or behave unexpectedly from time to time. This is where you must pick up the phone and speak to one of the customer service representatives of your EMR Software Company. A good customer support team can address even your most complex concerns in a knowledgeable and skilled manner, fixing small glitches while you are on the phone. Major issues or changes to the behavior of your Electronic Medical Records application will require not only a knowledgeable customer service rep, but one who will go the extra mile and pass on your concerns to the appropriate departments to fix the issue and ensure customer satisfaction. Similarly, a bad agent will just make things worse. Some vendors provide support as a part of the plan you're already paying for, while others charge extra for support. Scout the market, read reviews, or just ask point-blank if there will be a special support team assigned to each practitioner and whether you'll be charged for the service. Most importantly, however, you must speak to existing users of the EMR Software company to learn about their experience with the customer support team.

Hidden Cost

There are varying price lists out there; some offer free services, while others charge an arm and a leg for specialty services. Either way, there will be hidden costs that you might get to know about later. Fix your budget and talk to vendors you interview about hidden costs within the contract and whether services such as training and support are free.

Mobility

Smartphones have changed the dynamics of mobile usage. Handheld devices are easy to carry around and can be used for a number of purposes. Most people are ditching the cumbersome PC for a handheld device. Doctors mostly use iPads or Tablets in the examination room to take down patient symptoms, check the history, and note down the prescription, so the EMR software must have a mobile application that is synced with all the mobile devices being used in the practice.

advancedmd emr mobile

AdvancedMD Mac EMR

Market Trends To Be Aware Of

Like anything else, the EMR industry is also subject to changes. From new technology to legalities and governing bodies, everything is constantly changing. Here are some of the changes medical practices should keep track of.

Meaningful Use Changes

At a recent healthcare conference, Andy Slavitt, the administrator of the Centers for Medicare & Medicaid Services, declared that Meaningful Use was over and would be replaced by the end of this year with something better. But a deeper look into the claims revealed that meaningful use would very much still be there, only much improved. The new measures aim to make the reporting and benchmarking for reaching the required reports much easier and less stringent than under Meaningful Use, along with other changes. Yet it is safe to say that none of these changes will make an impact until the end of 2017.

Cloud-Based Services

It's no surprise that more vendors are switching to Cloud-Based EMR software. Cloud-based EMR software systems can cut down on steep upfront costs that otherwise would be spent on client servers, and they can even be hosted from any device with an internet connection and a web browser, making them a much more convenient option. Research has found that only 25% of practitioners are interested in a web-based EMR system, whilst 50% are willing to have it as an initial model that eventually transitions to cloud-based.

Accessibility

The EHR software industry is quickly widening its range of practice types to become accessible to a wider range of healthcare services. The number of people who lack the time and knowledge in health IT is increasing each year. This makes optimizing these EMR software solutions more difficult as they must now cater to different needs. Douglas W. Bowerman, MD, predicts we will see a “continued trend towards accessibility” in Electronic Health Records software, both in terms of how we access them – on mobile, for instance – and who can access the EHR software.

Standardization

Currently, Electronic Medical Records software systems are regulated by very lax standards. Due to this, some Electronic Health Records software vendors have had to pay millions of dollars in settlement fees for false claims about meaningful use certifications. Regulations for electronic medical records are becoming far more strict and more transparent to prevent such incidents in the future. Medical billing coders will likely use separate interfaces from physicians as they both require unrelated data, so sharing the same regulations would likely lead to life-threatening miscommunication.

Patient-Centered Engagement

The growth of your practice can be greatly benefited by boosting patient engagement. One approach can be to make resources and content readily available within patient communities. Another can be to increase patient outreach.  Additionally, regular appointment reminders (which can be handled via appointment reminder EMR software) can reduce cancellations and improve patient engagement.

Changing Dynamics

Electronic Health Records (EHR) Software is constantly influenced by developments in technology. A common example is the recent addition of AI Virtual Assistants to EMR software systems, which can assist practitioners with daily tasks and increase practice efficiency. With industry leaders such as Apple and Google looking to enter the healthcare space, more competition can be expected between Electronic Medical Records software vendors. This will likely lead to the rapid modernization of EHR solutions and large-scale updates.

Better Patient Access

While better patient access is expected of many EHR software systems, the feature has not been completely integrated yet. According to a study in 2019, only 10% of patients (who had access to their records) viewed them. Additionally, of these patients, 63% were encouraged to do so by their respective providers. Vendors of Electronic Medical Records Software (EMR Software) are updating their systems to be easier to navigate and to better suit patients’ requirements; this also prepares EMR systems for potential future regulatory changes. More health practices are also providing more guidance and raising awareness to encourage more patients to regularly check their health records before appointments.

EHR Footprint

Electronic Health Records software systems must be inclusive of a wide range of digital capabilities. By working towards better data liquidity, data would be more accessible and therefore increase the EHR footprint, which can be done without compromising on security. Additionally, implementing interoperable electronic health record systems (EHR systems) would also allow better access and exchange of patient information between healthcare organizations.

Easy Access

Patients require quick, easy, and secure access to their data so that they can be engaged and informed in their healthcare. The Electronic Medical Records (EMR) software industry is evolving with the latest health IT technology to improve on these points, which will help patients build better trust with their providers. This trend will likely continue for greater health outcomes.

Widespread Interoperability

There’s a lack of data-sharing standards across EMR software systems, which stops patient information from being shared across different practices. This can lead to problems in diagnosis (for patients who visit various centers) and even for the patients themselves. To solve this, EHR vendors are adding more updates to their software to make Electronic Medical Records software more interoperable. And to include more integrations to allow such data to be shared more efficiently.

Patient Portal

There are many benefits to a patient portal EMR system. They remove the need for paperwork and manual fetching of data, and they offer a direct portal for patients to view their medical records. By allowing easy access to their records, patient portals also encourage patients to be more involved in their healthcare, which enables easier diagnosis for medical practitioners.

Artificial Intelligence (AI)

Artificial intelligence and machine learning have both had major impacts on health IT in recent years. It is likely that as these continue to evolve and change, they will have just as big an impact on EMR software systems. AI and machine learning algorithms can improve Electronic Health Records software by making it more intuitive and efficient. They can help streamline medical workflows and improve patient outcomes. Applying these technologies to EHR software systems can also enable physicians to provide much more personalized and proactive care by identifying any potential health issues early through analysis of patient data. By providing access and insights into large amounts of patient data, artificial intelligence and machine learning algorithms have the potential to revolutionize clinical research and drug development.

Cybersecurity

As we progress into 2025, cybersecurity in Electronic Medical Record (EMR) systems is set to become increasingly sophisticated in response to rising cyber threats. Key developments will include advanced encryption and the use of blockchain for enhanced data integrity. Artificial Intelligence (AI) will be crucial for real-time threat detection and predictive analytics, and compliance with global data protection regulations will become more critical, necessitating adaptive strategies from EHR software providers. Additionally, user training will gain prominence to mitigate risks associated with human error. Overall, the focus will shift towards building a proactive, resilient digital healthcare environment, fortified against emerging cyber challenges.

Enhanced Data Security and Privacy

As we navigate deeper into the digital era, enhancing data security and privacy within healthcare systems, particularly in Electronic Medical Record (EMR) platforms, has emerged as a paramount concern. The surge in digital health data necessitates robust security measures to protect sensitive patient information from cyber threats and breaches. Innovations in encryption technologies and the adoption of blockchain are pivotal in fortifying EMR systems against unauthorized access, ensuring that patient records are both secure and tamper-proof. Furthermore, stringent adherence to data protection regulations, such as HIPAA in the United States, reinforces the legal framework for privacy and security. Educating healthcare professionals on best practices for data handling and implementing advanced user authentication mechanisms are critical steps in mitigating risks. As healthcare continues to embrace technology, prioritizing data security and privacy will be essential in maintaining patient trust and upholding the integrity of healthcare delivery.

Latest in Pathology EMR Software

As of 2023, pathology Electronic Medical Record (EMR) software has seen significant advancements, driven by technological innovations and evolving healthcare needs. In 2021, the FDA approved the first AI-based digital pathology system, Paige Prostate, which integrates with EMR platforms to diagnose prostate cancer, marking a milestone in AI adoption in pathology. This approval accelerated the integration of AI and machine learning into pathology EMR systems, enabling features like automated image analysis and predictive diagnostics. In 2022, the adoption of cloud-based pathology EMR solutions surged, with companies like Proscia and PathAI launching platforms that offer scalable, secure, and collaborative environments for pathologists. These systems facilitate real-time data sharing and remote diagnostics, which became critical during the COVID-19 pandemic. The rise of whole-slide imaging (WSI) technology, which gained FDA approval for primary diagnosis in 2017, has been increasingly integrated into EMR systems, allowing pathologists to digitize and analyze slides remotely. Interoperability improvements, driven by the 21st Century Cures Act (2020), have also pushed vendors to ensure seamless data exchange between pathology EMRs, LIS, and hospital EMRs. In 2023, major EMR software providers like Epic and Cerner expanded their pathology modules to include advanced analytics and customizable reporting, addressing the growing demand for data-driven insights in diagnostic workflows. These developments highlight the ongoing transformation of pathology EMR software into a more efficient, accurate, and collaborative tool for modern healthcare.
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